Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
PSHAa0537Homologs of previously reported genes of unknown function. (56 aa)    
Predicted Functional Partners:
osmY
Putative hyperosmotically inducible periplasmic protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy.
 
  
 0.913
PSHAa0536
Homologs of previously reported genes of unknown function.
  
    0.902
PSHAa2218
Homologs of previously reported genes of unknown function; Belongs to the UPF0337 (CsbD) family.
  
    0.894
ecfH
Homologs of previously reported genes of unknown function.
  
    0.594
PSHAb0553
Putative lipoprotein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy.
   
    0.562
PSHAa2210
Putative orphan protein; No homology to any previously reported sequences.
   
    0.505
Your Current Organism:
Pseudoalteromonas haloplanktis
NCBI taxonomy Id: 326442
Other names: P. haloplanktis TAC125, Pseudoalteromonas haloplanktis TAC125, Pseudoalteromonas haloplanktis str. TAC125, Pseudoalteromonas haloplanktis strain TAC125
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