Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
PSHAa0548Homologs of previously reported genes of unknown function. (198 aa)    
Predicted Functional Partners:
PSHAa1833
Homologs of previously reported genes of unknown function.
  
     0.739
PSHAa0754
Homologs of previously reported genes of unknown function.
  
     0.724
PSHAa0755
Homologs of previously reported genes of unknown function.
  
     0.716
folE2
Conserved protein of unknown function; Converts GTP to 7,8-dihydroneopterin triphosphate.
       0.702
PSHAa1088
Homologs of previously reported genes of unknown function.
  
     0.693
PSHAa1962
Homologs of previously reported genes of unknown function.
  
     0.686
bamC
Putative lipoprotein-34 NlpB; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.
  
     0.670
PSHAa1895
Putative orphan protein; No homology to any previously reported sequences.
 
    0.655
mtnN
5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase; Catalyzes the irreversible cleavage of the glycosidic bond in both 5'-methylthioadenosine (MTA) and S-adenosylhomocysteine (SAH/AdoHcy) to adenine and the corresponding thioribose, 5'- methylthioribose and S-ribosylhomocysteine, respectively. Belongs to the PNP/UDP phosphorylase family. MtnN subfamily.
 
     0.648
PSHAa0492
Homologs of previously reported genes of unknown function.
  
     0.604
Your Current Organism:
Pseudoalteromonas haloplanktis
NCBI taxonomy Id: 326442
Other names: P. haloplanktis TAC125, Pseudoalteromonas haloplanktis TAC125, Pseudoalteromonas haloplanktis str. TAC125, Pseudoalteromonas haloplanktis strain TAC125
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