STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
arcAAerobic respiration control protein arcA (Dye resistance protein); Function of homologous gene experimentally demonstrated in an other organism; regulator. (238 aa)    
Predicted Functional Partners:
arcB
Aerobic respiration control sensor protein arcB; Function of strongly homologous gene; regulator.
 
 0.993
PSHAb0289
Putative two-component hybrid sensor and regulator; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; regulator.
 
 
 0.922
PSHAa0654
Homologs of previously reported genes of unknown function.
 
 
 0.902
PSHAa0077
Putative sensor protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; receptor.
 
 
 0.870
envZ
Two-component system, OmpR family, osmolarity sensor histidine kinase EnvZ; Function of homologous gene experimentally demonstrated in an other organism; receptor.
 
 
 0.826
rstB
Sensory histidine kinase in two-component regulatory system with RstA; Function of homologous gene experimentally demonstrated in an other organism; regulator.
 
 
 0.820
PSHAa0374
Putative sensor histidine kinase protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; regulator.
 
 
 0.817
PSHAa0860
Putative orphan protein; No homology to any previously reported sequences; regulator.
 
 
 0.809
PSHAa2919
Putative control sensor/kinase protein (ArcB, TorS, ChiS, LuxQ, BvgS family); Function of strongly homologous gene; receptor.
 
 
 0.808
PSHAa0111
Putative membrane bound sensor or esterase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy.
 
 
 0.794
Your Current Organism:
Pseudoalteromonas haloplanktis
NCBI taxonomy Id: 326442
Other names: P. haloplanktis TAC125, Pseudoalteromonas haloplanktis TAC125, Pseudoalteromonas haloplanktis str. TAC125, Pseudoalteromonas haloplanktis strain TAC125
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