Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
PSHAa0558Putative outer membrane transport protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; membrane component. (472 aa)    
Predicted Functional Partners:
PSHAa0559
Putative Secretion protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; transporter; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
 
 0.978
acrB
Putative multidrug efflux pump (RND family); Function of strongly homologous gene; transporter.
 0.966
acrE
Putative lipoprotein component of efflux protein (exporter); Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; transporter; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
 0.962
PSHAa0560
Putative multidrug resistance protein(AcrB/AcrD/AcrF family); Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
 
 
 0.949
PSHAb0325
Putative outer membrane protein oprM precursor of a metabolite export system; Function of strongly homologous gene; transporter.
  
  
 
0.925
tolC
Outer membrane protein tolC precursor; Function of homologous gene experimentally demonstrated in an other organism; transporter.
     
 0.911
PSHAa2832
Putative multidrug efflux system (AcrA/AcrE family); Function of homologous gene experimentally demonstrated in an other organism; transporter; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
 0.902
PSHAa2273
Putative acrB/acrD/acrF acriflavin resistance family protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; membrane component; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
 
 0.879
PSHAa2272
Homologs of previously reported genes of unknown function; membrane component; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
  
 0.872
PSHAa2833
Putative cation efflux system (AcrB/AcrD/AcrF family); Function of strongly homologous gene; transporter; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
 
 0.872
Your Current Organism:
Pseudoalteromonas haloplanktis
NCBI taxonomy Id: 326442
Other names: P. haloplanktis TAC125, Pseudoalteromonas haloplanktis TAC125, Pseudoalteromonas haloplanktis str. TAC125, Pseudoalteromonas haloplanktis strain TAC125
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