STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PSHAa0575Putative Zn(II)-responsive transcriptional regulator, regulates Zn export (MerR family); Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; factor. (128 aa)    
Predicted Functional Partners:
PSHAa0654
Homologs of previously reported genes of unknown function.
   
 
 0.793
PSHAa2621
Putative Sensory box sensor histidine kinase/response regulator; Function of strongly homologous gene; receptor.
   
 
 0.790
rpoD
RNA polymerase sigma factor rpoD (Sigma-70); Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth.
  
 
 0.780
rpoB
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.673
PSHAa1453
Putative Transcriptional regulator; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; regulator.
  
   
 0.656
nudE
ADP compounds hydrolase nudE; Function of homologous gene experimentally demonstrated in an other organism; enzyme; Belongs to the Nudix hydrolase family.
   
  
 0.608
copB
Copper resistance protein B [Precursor] (CPx-type copper ATPase); Function of homologous gene experimentally demonstrated in an other organism; enzyme.
 
  
 0.608
copA
Copper resistance protein A (CPx-type copper ATPase); Function of homologous gene experimentally demonstrated in an other organism; enzyme.
 
  
 0.573
PSHAb0289
Putative two-component hybrid sensor and regulator; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; regulator.
   
 
 0.565
PSHAa0110
Putative DnaJ-class molecular chaperone; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; molecular chaperone.
  
 
 0.551
Your Current Organism:
Pseudoalteromonas haloplanktis
NCBI taxonomy Id: 326442
Other names: P. haloplanktis TAC125, Pseudoalteromonas haloplanktis TAC125, Pseudoalteromonas haloplanktis str. TAC125, Pseudoalteromonas haloplanktis strain TAC125
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