Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
phoRPhosphate regulon sensor protein phoR; Function of homologous gene experimentally demonstrated in an other organism; regulator. (443 aa)    
Predicted Functional Partners:
phoB
Phosphate regulon transcriptional regulatory protein phoB; Function of homologous gene experimentally demonstrated in an other organism; regulator.
 0.998
phoP
Response regulator in two-component regulatory system with PhoQ; Function of homologous gene experimentally demonstrated in an other organism; regulator.
 
 0.932
rstA
Response regulator (activator) in two-component regulatory; Function of strongly homologous gene; regulator.
 
 0.905
baeR
Transcriptional regulatory protein in two-component regulatory system with baeS; Function of homologous gene experimentally demonstrated in an other organism; regulator.
 
 0.901
PSHAa0654
Homologs of previously reported genes of unknown function.
 
 
0.900
ompR
Two-component system, OmpR family, phosphate regulon response regulator OmpR; Function of homologous gene experimentally demonstrated in an other organism; regulator.
 
 0.863
cusR
Two-component system, OmpR family, copper resistance phosphate regulon response regulator CusR; Function of homologous gene experimentally demonstrated in an other organism; regulator.
 
 0.858
PSHAb0289
Putative two-component hybrid sensor and regulator; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; regulator.
 
 
 
0.851
cpxR
Transcriptional regulatory protein CpxR; Function of homologous gene experimentally demonstrated in an other organism; regulator.
 
 0.844
PSHAa0861
Putative transcriptional regulatory protein RstA; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; regulator.
 
 0.824
Your Current Organism:
Pseudoalteromonas haloplanktis
NCBI taxonomy Id: 326442
Other names: P. haloplanktis TAC125, Pseudoalteromonas haloplanktis TAC125, Pseudoalteromonas haloplanktis str. TAC125, Pseudoalteromonas haloplanktis strain TAC125
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