Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
PSHAa0614Homologs of previously reported genes of unknown function; enzyme. (557 aa)    
Predicted Functional Partners:
PSHAa0261
Putative FxsA protein (Suppressor of F exclusion of phage T7); Function of homologous gene experimentally demonstrated in an other organism; membrane component.
  
  
 0.580
PSHAa0616
Putative orphan protein; No homology to any previously reported sequences.
       0.549
PSHAa0615
Homologs of previously reported genes of unknown function.
       0.532
PSHAa0613
Homologs of previously reported genes of unknown function.
       0.511
PSHAa1171
Homologs of previously reported genes of unknown function.
 
     0.456
PSHAa1400
Homologs of previously reported genes of unknown function.
 
     0.429
ampH
Putative beta-lactamase, penicillin-binding protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; enzyme.
 
     0.424
Your Current Organism:
Pseudoalteromonas haloplanktis
NCBI taxonomy Id: 326442
Other names: P. haloplanktis TAC125, Pseudoalteromonas haloplanktis TAC125, Pseudoalteromonas haloplanktis str. TAC125, Pseudoalteromonas haloplanktis strain TAC125
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