Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
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experimentally determined
co-expression
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gene neighborhood
gene co-occurrence
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[Homology]
Score
PSHAa0622Putative response regulator in two-component regulatory system; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; regulator. (449 aa)    
Predicted Functional Partners:
PSHAa0620
Putative sensory histidine kinase in regulatory system; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; regulator.
 
 0.987
rpoN
Sigma N (sigma 54) factor of RNA polymerase; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
 
  
 0.957
PSHAb0161
Putative sensory histidine kinase in two-component regulatory system; Function of strongly homologous gene; receptor.
    
 0.910
PSHAa0621
Putative orphan protein; No homology to any previously reported sequences.
       0.773
PSHAa0623
Homologs of previously reported genes of unknown function.
       0.741
glnL
Two-component system, NtrC family, nitrogen regulation sensor histidine kinase GlnL; Function of homologous gene experimentally demonstrated in an other organism; regulator.
 
 0.667
flhG
Putative flagellar biosynthetic protein FlhG; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy.
  
 
 0.649
PSHAa0619
Putative orphan protein; No homology to any previously reported sequences.
       0.572
fliM
Flagellar biosynthesis; FliM is one of three proteins (FliG, FliN, FliM) that forms the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation.
  
  
 0.548
PSHAa0654
Homologs of previously reported genes of unknown function.
  
 
 0.450
Your Current Organism:
Pseudoalteromonas haloplanktis
NCBI taxonomy Id: 326442
Other names: P. haloplanktis TAC125, Pseudoalteromonas haloplanktis TAC125, Pseudoalteromonas haloplanktis str. TAC125, Pseudoalteromonas haloplanktis strain TAC125
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