STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PSHAa0623Homologs of previously reported genes of unknown function. (166 aa)    
Predicted Functional Partners:
PSHAa0621
Putative orphan protein; No homology to any previously reported sequences.
       0.859
PSHAa0622
Putative response regulator in two-component regulatory system; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; regulator.
       0.748
PSHAa0620
Putative sensory histidine kinase in regulatory system; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; regulator.
       0.729
PSHAa0619
Putative orphan protein; No homology to any previously reported sequences.
       0.517
PSHAa2986
Putative ATP-binding protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy.
  
     0.515
PSHAa0618
Homologs of previously reported genes of unknown function.
       0.435
PSHAa2988
Homologs of previously reported genes of unknown function.
  
     0.419
PSHAa2989
Homologs of previously reported genes of unknown function.
  
     0.411
PSHAa0617
Putative orphan protein; No homology to any previously reported sequences.
       0.408
PSHAa1944
Homologs of previously reported genes of unknown function.
  
     0.400
Your Current Organism:
Pseudoalteromonas haloplanktis
NCBI taxonomy Id: 326442
Other names: P. haloplanktis TAC125, Pseudoalteromonas haloplanktis TAC125, Pseudoalteromonas haloplanktis str. TAC125, Pseudoalteromonas haloplanktis strain TAC125
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.