STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
PSHAa0628Homologs of previously reported genes of unknown function. (229 aa)    
Predicted Functional Partners:
PSHAa0627
Putative sensor histidine kinase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; membrane component.
 
 
 0.965
PSHAb0289
Putative two-component hybrid sensor and regulator; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; regulator.
  
 
 0.910
PSHAa0077
Putative sensor protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; receptor.
  
 
 0.847
arcB
Aerobic respiration control sensor protein arcB; Function of strongly homologous gene; regulator.
  
 
 0.841
PSHAa0631
Putative transpeptidase family protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; enzyme.
 
   
 0.841
PSHAa0654
Homologs of previously reported genes of unknown function.
  
 
 0.841
cusS
Putative sensor transduction kinase (copper resistance); Function of homologous gene experimentally demonstrated in an other organism; receptor.
 
 
 0.751
baeS
Putative sensory transduction histidine kinase in two-component regulatory system with baeR; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; receptor.
 
 
 0.726
PSHAa0630
Homologs of previously reported genes of unknown function.
 
     0.725
barA
Sensor protein barA; Function of strongly homologous gene; regulator.
  
 
 0.716
Your Current Organism:
Pseudoalteromonas haloplanktis
NCBI taxonomy Id: 326442
Other names: P. haloplanktis TAC125, Pseudoalteromonas haloplanktis TAC125, Pseudoalteromonas haloplanktis str. TAC125, Pseudoalteromonas haloplanktis strain TAC125
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.