Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
PSHAa0639Homologs of previously reported genes of unknown function. (291 aa)    
Predicted Functional Partners:
PSHAb0381
Putative osmC-like protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy.
  
  
 0.675
PSHAa0078
Homologs of previously reported genes of unknown function.
  
  
 0.671
PSHAa0640
Homologs of previously reported genes of unknown function.
 
     0.599
PSHAa2296
Putative ABC-type transport system, permease component; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; transporter.
  
  
 0.593
PSHAa1234
Major NAD(P)H-flavin oxidoreductase; Function of homologous gene experimentally demonstrated in an other organism; enzyme.
  
  
 0.542
PSHAa1411
Putative nitroreductase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; enzyme.
  
  
 0.542
PSHAa0637
Putative orphan protein; Doubtful CDS.
       0.522
PSHAa0638
Homologs of previously reported genes of unknown function.
       0.522
PSHAa1662
Competence protein ComEC; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; enzyme.
       0.436
fadL
Long-chain fatty acid transport protein precursor (Outer membrane fadL protein); Function of homologous gene experimentally demonstrated in an other organism; transporter.
  
     0.407
Your Current Organism:
Pseudoalteromonas haloplanktis
NCBI taxonomy Id: 326442
Other names: P. haloplanktis TAC125, Pseudoalteromonas haloplanktis TAC125, Pseudoalteromonas haloplanktis str. TAC125, Pseudoalteromonas haloplanktis strain TAC125
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