STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PSHAa0640Homologs of previously reported genes of unknown function. (233 aa)    
Predicted Functional Partners:
PSHAa0641
Putative ATP-dependent RNA helicase(rhlE-like); Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; enzyme; Belongs to the DEAD box helicase family.
       0.784
PSHAa0639
Homologs of previously reported genes of unknown function.
 
     0.599
PSHAa1702
Homologs of previously reported genes of unknown function.
  
     0.568
gltX
Glutamyl-tRNA synthetase (Glutamate-tRNA ligase); Catalyzes the attachment of glutamate to tRNA(Glu) in a two- step reaction: glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu); Belongs to the class-I aminoacyl-tRNA synthetase family. Glutamate--tRNA ligase type 1 subfamily.
       0.529
PSHAa1864
Homologs of previously reported genes of unknown function.
  
     0.529
PSHAa1982
Homologs of previously reported genes of unknown function.
  
     0.475
PSHAa1983
Homologs of previously reported genes of unknown function.
  
     0.474
PSHAa1733
Homologs of previously reported genes of unknown function.
  
     0.432
PSHAb0183
Putative transporter; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; membrane component.
  
     0.415
PSHAa2887
Homologs of previously reported genes of unknown function.
 
     0.411
Your Current Organism:
Pseudoalteromonas haloplanktis
NCBI taxonomy Id: 326442
Other names: P. haloplanktis TAC125, Pseudoalteromonas haloplanktis TAC125, Pseudoalteromonas haloplanktis str. TAC125, Pseudoalteromonas haloplanktis strain TAC125
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.