PSHAa0673 protein (Pseudoalteromonas haloplanktis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

PSHAa0673

Putative ribosomal subunit interface protein, similar to protein Y; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; factor. (118 aa)

Predicted Functional Partners:

rplD

0.806

rpsI

0.794

rpsU

0.793

rpmA

0.792

rpsF

0.788

rpmH

0.788

rplY

0.786

rpmB

0.786

rpmE

0.785

rpsD

0.784

Your Current Organism:

Pseudoalteromonas haloplanktis

NCBI taxonomy Id: 326442
Other names: P. haloplanktis TAC125, Pseudoalteromonas haloplanktis TAC125, Pseudoalteromonas haloplanktis str. TAC125, Pseudoalteromonas haloplanktis strain TAC125

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
PSHAa0673	rplD	PSHAa0673	PSHAa0145	Putative ribosomal subunit interface protein, similar to protein Y; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; factor.	50S ribosomal subunit protein L4; One of the primary rRNA binding proteins, this protein initially binds near the 5'-end of the 23S rRNA. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome.	0.806
PSHAa0673	rplY	PSHAa0673	PSHAa1053	Putative ribosomal subunit interface protein, similar to protein Y; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; factor.	50S ribosomal protein L25; This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance. Belongs to the bacterial ribosomal protein bL25 family. CTC subfamily.	0.786
PSHAa0673	rpmA	PSHAa0673	PSHAa2655	Putative ribosomal subunit interface protein, similar to protein Y; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; factor.	50S ribosomal subunit protein L27; Function of homologous gene experimentally demonstrated in an other organism; structural protein; Belongs to the bacterial ribosomal protein bL27 family.	0.792
PSHAa0673	rpmB	PSHAa0673	PSHAa2642	Putative ribosomal subunit interface protein, similar to protein Y; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; factor.	50S ribosomal subunit protein L28; Function of homologous gene experimentally demonstrated in an other organism; structural protein; Belongs to the bacterial ribosomal protein bL28 family.	0.786
PSHAa0673	rpmE	PSHAa0673	PSHAa2726	Putative ribosomal subunit interface protein, similar to protein Y; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; factor.	50S ribosomal subunit protein L31; Binds the 23S rRNA.	0.785
PSHAa0673	rpmH	PSHAa0673	PSHAa3026	Putative ribosomal subunit interface protein, similar to protein Y; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; factor.	50S ribosomal subunit protein L34; Function of homologous gene experimentally demonstrated in an other organism; structural protein; Belongs to the bacterial ribosomal protein bL34 family.	0.788
PSHAa0673	rpsD	PSHAa0673	PSHAa2807	Putative ribosomal subunit interface protein, similar to protein Y; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; factor.	30S ribosomal subunit protein S4; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit.	0.784
PSHAa0673	rpsF	PSHAa0673	PSHAa2443	Putative ribosomal subunit interface protein, similar to protein Y; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; factor.	30S ribosomal subunit protein S6; Binds together with S18 to 16S ribosomal RNA.	0.788
PSHAa0673	rpsI	PSHAa0673	PSHAa2531	Putative ribosomal subunit interface protein, similar to protein Y; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; factor.	30S ribosomal subunit protein S9; Function of homologous gene experimentally demonstrated in an other organism; structural protein; Belongs to the universal ribosomal protein uS9 family.	0.794
PSHAa0673	rpsU	PSHAa0673	PSHAa0352	Putative ribosomal subunit interface protein, similar to protein Y; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; factor.	30S ribosomal subunit protein S21; Function of homologous gene experimentally demonstrated in an other organism; structural protein; Belongs to the bacterial ribosomal protein bS21 family.	0.793
rplD	PSHAa0673	PSHAa0145	PSHAa0673	50S ribosomal subunit protein L4; One of the primary rRNA binding proteins, this protein initially binds near the 5'-end of the 23S rRNA. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome.	Putative ribosomal subunit interface protein, similar to protein Y; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; factor.	0.806
rplD	rplY	PSHAa0145	PSHAa1053	50S ribosomal subunit protein L4; One of the primary rRNA binding proteins, this protein initially binds near the 5'-end of the 23S rRNA. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome.	50S ribosomal protein L25; This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance. Belongs to the bacterial ribosomal protein bL25 family. CTC subfamily.	0.991
rplD	rpmA	PSHAa0145	PSHAa2655	50S ribosomal subunit protein L4; One of the primary rRNA binding proteins, this protein initially binds near the 5'-end of the 23S rRNA. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome.	50S ribosomal subunit protein L27; Function of homologous gene experimentally demonstrated in an other organism; structural protein; Belongs to the bacterial ribosomal protein bL27 family.	0.996
rplD	rpmB	PSHAa0145	PSHAa2642	50S ribosomal subunit protein L4; One of the primary rRNA binding proteins, this protein initially binds near the 5'-end of the 23S rRNA. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome.	50S ribosomal subunit protein L28; Function of homologous gene experimentally demonstrated in an other organism; structural protein; Belongs to the bacterial ribosomal protein bL28 family.	0.991
rplD	rpmE	PSHAa0145	PSHAa2726	50S ribosomal subunit protein L4; One of the primary rRNA binding proteins, this protein initially binds near the 5'-end of the 23S rRNA. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome.	50S ribosomal subunit protein L31; Binds the 23S rRNA.	0.966
rplD	rpmH	PSHAa0145	PSHAa3026	50S ribosomal subunit protein L4; One of the primary rRNA binding proteins, this protein initially binds near the 5'-end of the 23S rRNA. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome.	50S ribosomal subunit protein L34; Function of homologous gene experimentally demonstrated in an other organism; structural protein; Belongs to the bacterial ribosomal protein bL34 family.	0.968
rplD	rpsD	PSHAa0145	PSHAa2807	50S ribosomal subunit protein L4; One of the primary rRNA binding proteins, this protein initially binds near the 5'-end of the 23S rRNA. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome.	30S ribosomal subunit protein S4; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit.	0.999
rplD	rpsF	PSHAa0145	PSHAa2443	50S ribosomal subunit protein L4; One of the primary rRNA binding proteins, this protein initially binds near the 5'-end of the 23S rRNA. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome.	30S ribosomal subunit protein S6; Binds together with S18 to 16S ribosomal RNA.	0.997
rplD	rpsI	PSHAa0145	PSHAa2531	50S ribosomal subunit protein L4; One of the primary rRNA binding proteins, this protein initially binds near the 5'-end of the 23S rRNA. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome.	30S ribosomal subunit protein S9; Function of homologous gene experimentally demonstrated in an other organism; structural protein; Belongs to the universal ribosomal protein uS9 family.	0.997
rplD	rpsU	PSHAa0145	PSHAa0352	50S ribosomal subunit protein L4; One of the primary rRNA binding proteins, this protein initially binds near the 5'-end of the 23S rRNA. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome.	30S ribosomal subunit protein S21; Function of homologous gene experimentally demonstrated in an other organism; structural protein; Belongs to the bacterial ribosomal protein bS21 family.	0.956

page 1 of 6

Server load: low (18%) [HD]

Permalink

Network

Neighborhood

Experiments

Co-occurrence

Databases

Co-expression

Textmining

Fusion

© STRING Consortium 2026

Credits

Access

Info

About