STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
PSHAa0699Putative regulator in two-component regulatory system; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; regulator. (216 aa)    
Predicted Functional Partners:
barA
Sensor protein barA; Function of strongly homologous gene; regulator.
  
 
 0.916
PSHAb0289
Putative two-component hybrid sensor and regulator; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; regulator.
  
 
 0.891
PSHAa0585
Putative Sensory box histidine kinase/response regulator; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; membrane component.
 
 
 0.871
PSHAa2949
Putative sensor protein; Function of strongly homologous gene; receptor.
 
 
 0.866
PSHAa0654
Homologs of previously reported genes of unknown function.
  
 
 0.781
uhpB
Sensory histidine kinase in two-component regulatory system with UhpA, regulates uhpT expression; Function of homologous gene experimentally demonstrated in an other organism; receptor.
 
 
   0.774
acs
Acetyl-coenzyme A synthetase (Acetate--CoA ligase) (Acyl-activating enzyme); Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA; Belongs to the ATP-dependent AMP-binding enzyme family.
     
 0.770
prpC
Methylcitrate synthase (citrate synthase 2); Function of homologous gene experimentally demonstrated in an other organism; enzyme; Belongs to the citrate synthase family.
   
  
 0.742
PSHAa0077
Putative sensor protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; receptor.
   
 
 0.711
PSHAa2918
Putative transcriptional regulator, LuxR family; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; regulator.
  
     0.703
Your Current Organism:
Pseudoalteromonas haloplanktis
NCBI taxonomy Id: 326442
Other names: P. haloplanktis TAC125, Pseudoalteromonas haloplanktis TAC125, Pseudoalteromonas haloplanktis str. TAC125, Pseudoalteromonas haloplanktis strain TAC125
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