STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PSHAa0704Homologs of previously reported genes of unknown function. (505 aa)    
Predicted Functional Partners:
PSHAa0703
Homologs of previously reported genes of unknown function; membrane component.
 
   
 0.959
PSHAa0709
Homologs of previously reported genes of unknown function.
 
   
 0.954
PSHAa0706
Homologs of previously reported genes of unknown function; membrane component.
  
  
 0.850
PSHAa0705
Homologs of previously reported genes of unknown function; membrane component.
   
 
 0.834
PSHAa0707
Homologs of previously reported genes of unknown function.
     
 0.822
wcaJ
UDP-glucose lipid carrier transferase; Function of homologous gene experimentally demonstrated in an other organism; enzyme.
  
  
 0.753
PSHAa0708
Homologs of previously reported genes of unknown function.
       0.750
PSHAa1344
Homologs of previously reported genes of unknown function.
   
 
 0.709
ugd
UDP-glucose 6-dehydrogenase; Function of strongly homologous gene; enzyme.
  
  
 0.542
PSHAa1790
Homologs of previously reported genes of unknown function.
  
  
 0.531
Your Current Organism:
Pseudoalteromonas haloplanktis
NCBI taxonomy Id: 326442
Other names: P. haloplanktis TAC125, Pseudoalteromonas haloplanktis TAC125, Pseudoalteromonas haloplanktis str. TAC125, Pseudoalteromonas haloplanktis strain TAC125
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.