STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
PSHAa0705Homologs of previously reported genes of unknown function; membrane component. (327 aa)    
Predicted Functional Partners:
PSHAa0704
Homologs of previously reported genes of unknown function.
   
 
 0.868
PSHAa0706
Homologs of previously reported genes of unknown function; membrane component.
  
  
 0.857
PSHAa0703
Homologs of previously reported genes of unknown function; membrane component.
  
  
 0.856
PSHAa0707
Homologs of previously reported genes of unknown function.
  
  
 0.856
PSHAa0709
Homologs of previously reported genes of unknown function.
     
 0.832
PSHAa0708
Homologs of previously reported genes of unknown function.
       0.751
htpG
Chaperone protein htpG; Molecular chaperone. Has ATPase activity.
   
 0.529
PSHAa2902
Homologs of previously reported genes of unknown function; 11347268, 14672542.
    
 0.521
alaS
alanyl-tRNA synthetase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain.
   
 0.492
PSHAa0702
Putative orphan protein; No homology to any previously reported sequences.
       0.491
Your Current Organism:
Pseudoalteromonas haloplanktis
NCBI taxonomy Id: 326442
Other names: P. haloplanktis TAC125, Pseudoalteromonas haloplanktis TAC125, Pseudoalteromonas haloplanktis str. TAC125, Pseudoalteromonas haloplanktis strain TAC125
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.