Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
PSHAa0719Homologs of previously reported genes of unknown function. (270 aa)    
Predicted Functional Partners:
PSHAa0720
Putative orphan protein; No homology to any previously reported sequences; membrane component.
       0.801
PSHAa0718
Homologs of previously reported genes of unknown function; Belongs to the UPF0263 family.
       0.797
PSHAa0851
Homologs of previously reported genes of unknown function.
  
     0.607
PSHAa0717
Putative Enoyl-CoA hydratase/isomerase family protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; enzyme; Belongs to the enoyl-CoA hydratase/isomerase family.
 
     0.575
PSHAa0505
Homologs of previously reported genes of unknown function.
  
     0.571
PSHAa1621
Putative TonB-dependent receptor protein with OmpA-like transmembrane domain; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; leader peptide; Belongs to the outer membrane OOP (TC 1.B.6) superfamily.
  
     0.508
gspC
Putative general secretion pathway protein C; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; transporter.
  
     0.480
PSHAa0476
Putative TonB-dependent receptor; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy.
  
     0.479
PSHAb0363
Putative outer membrane porin; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; membrane component.
  
     0.472
PSHAa2567
Putative Outer membrane porin; Function of homologous gene experimentally demonstrated in an other organism; transporter.
  
     0.462
Your Current Organism:
Pseudoalteromonas haloplanktis
NCBI taxonomy Id: 326442
Other names: P. haloplanktis TAC125, Pseudoalteromonas haloplanktis TAC125, Pseudoalteromonas haloplanktis str. TAC125, Pseudoalteromonas haloplanktis strain TAC125
Server load: low (30%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.