Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
PSHAa0762Homologs of previously reported genes of unknown function. (152 aa)    
Predicted Functional Partners:
PSHAa0761
Homologs of previously reported genes of unknown function.
 
 
 
 0.984
PSHAa0276
Sodium-type polar flagellar protein motX; Function of homologous gene experimentally demonstrated in an other organism; transporter.
  
 
 
 0.904
fliF
Flagellar biosynthesis; The M ring may be actively involved in energy transduction. Belongs to the FliF family.
  
 
 
 0.826
motY
Putative Component of sodium-driven polar flagellar motor; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; structural protein.
  
 
 
 0.800
PSHAa0755
Homologs of previously reported genes of unknown function.
 
  
 0.783
PSHAa0819
Homologs of previously reported genes of unknown function.
  
     0.762
PSHAa0613
Homologs of previously reported genes of unknown function.
 
  
 0.753
PSHAa1833
Homologs of previously reported genes of unknown function.
  
     0.744
motB-2
Sodium-driven polar flagellar protein; Function of homologous gene experimentally demonstrated in an other organism; membrane component.
  
 
 0.732
flgG
Flagellar biosynthesis; Function of strongly homologous gene; structural protein; Belongs to the flagella basal body rod proteins family.
   
 
 0.719
Your Current Organism:
Pseudoalteromonas haloplanktis
NCBI taxonomy Id: 326442
Other names: P. haloplanktis TAC125, Pseudoalteromonas haloplanktis TAC125, Pseudoalteromonas haloplanktis str. TAC125, Pseudoalteromonas haloplanktis strain TAC125
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