Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
PSHAa0819Homologs of previously reported genes of unknown function. (133 aa)    
Predicted Functional Partners:
PSHAa0817
Homologs of previously reported genes of unknown function.
 
  
 0.957
cheW
Purine-binding chemotaxis protein; Function of homologous gene experimentally demonstrated in an other organism; regulator.
 
  
 0.871
cheZ
Chemotaxis protein cheZ; Plays an important role in bacterial chemotaxis signal transduction pathway by accelerating the dephosphorylation of phosphorylated CheY (CheY-P).
 
    0.863
PSHAa0816
Putative ParA family protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; enzyme.
 
  
 0.841
flhF
Putative Flagellar biosynthetic protein FlhF(Flagella associated GTP-binding protein); Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy.
 
    0.821
PSHAa0814
Putative Chemotaxis motA protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; membrane component.
  
  
 0.791
PSHAa0761
Homologs of previously reported genes of unknown function.
  
     0.772
fliJ
Flagellar protein; Function of strongly homologous gene; structural protein.
 
     0.766
motB
Putative chemotaxis protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; membrane component.
  
    0.763
PSHAa0762
Homologs of previously reported genes of unknown function.
  
     0.762
Your Current Organism:
Pseudoalteromonas haloplanktis
NCBI taxonomy Id: 326442
Other names: P. haloplanktis TAC125, Pseudoalteromonas haloplanktis TAC125, Pseudoalteromonas haloplanktis str. TAC125, Pseudoalteromonas haloplanktis strain TAC125
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