STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
PSHAa0835Homologs of previously reported genes of unknown function. (99 aa)    
Predicted Functional Partners:
PSHAa1662
Competence protein ComEC; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; enzyme.
 
  
 0.848
PSHAa0834
Putative DNA damage-inducible gene in SOS regulon, dependent on cyclic AMP and H-NS; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy.
       0.688
pilD
Type 4 prepilin-like proteins leader peptide processing enzyme; Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue.
   
  
 0.655
queD
Putative queD protein; Catalyzes the NADPH-dependent reduction of 7-cyano-7- deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1).
     
 0.610
yifB
Putative regulator; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy.
  
  
 0.565
PSHAa2006
Homologs of previously reported genes of unknown function.
   
  
 0.556
ssb
Single-strand binding protein (SSB) (Helix-destabilizing protein); Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism.
  
  
 0.535
smf
Homologs of previously reported genes of unknown function.
 
  
 0.519
PSHAa1210
Putative response regulator; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; regulator.
  
    0.495
gspF
Putative general secretion pathway protein F; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; transporter.
  
  
 0.489
Your Current Organism:
Pseudoalteromonas haloplanktis
NCBI taxonomy Id: 326442
Other names: P. haloplanktis TAC125, Pseudoalteromonas haloplanktis TAC125, Pseudoalteromonas haloplanktis str. TAC125, Pseudoalteromonas haloplanktis strain TAC125
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