Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
PSHAa0847Putative orphan protein; No homology to any previously reported sequences. (393 aa)    
Predicted Functional Partners:
PSHAa0846
Putative peptidase precursor; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; enzyme.
 
     0.814
PSHAa2436
Homologs of previously reported genes of unknown function.
  
     0.654
ccmF
Cytochrome c-type biogenesis protein ccmF; Function of homologous gene experimentally demonstrated in an other organism; carrier.
  
 
 0.605
PSHAa0848
Putative methyl-accepting chemotaxis protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; membrane component.
   
   0.581
PSHAa1826
Putative sigma factor; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; factor; Belongs to the sigma-70 factor family. ECF subfamily.
 
     0.527
PSHAa1192
Putative TPR domain protein (tetratricopeptide repeat); Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; 9482716, 1882418.
 
   0.524
PSHAa0695
Putative outer membrane receptor for ferric iron uptake; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; membrane component.
  
     0.496
PSHAa0435
Putative transcriptional regulator, AraC family; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; regulator.
  
     0.477
PSHAb0525
Putative unknown membrane associated protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; regulator.
 
   0.457
ccmH
Cytochrome c-type biogenesis protein CcmH; Possible subunit of a heme lyase.
  
  
 0.453
Your Current Organism:
Pseudoalteromonas haloplanktis
NCBI taxonomy Id: 326442
Other names: P. haloplanktis TAC125, Pseudoalteromonas haloplanktis TAC125, Pseudoalteromonas haloplanktis str. TAC125, Pseudoalteromonas haloplanktis strain TAC125
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