Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
PSHAa0851Homologs of previously reported genes of unknown function. (283 aa)    
Predicted Functional Partners:
rstA
Response regulator (activator) in two-component regulatory; Function of strongly homologous gene; regulator.
 
     0.870
PSHAa0852
Putative orphan protein; No homology to any previously reported sequences.
       0.868
rstB
Sensory histidine kinase in two-component regulatory system with RstA; Function of homologous gene experimentally demonstrated in an other organism; regulator.
 
     0.845
PSHAa0397
Putative orphan protein; No homology to any previously reported sequences.
  
     0.678
mipA
Putative scaffolding protein for murein-synthesizing holoenzyme, outer membrane protein; Function of homologous gene experimentally demonstrated in an other organism; structural protein.
  
     0.676
PSHAa0571
Putative alginate lyase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; enzyme.
  
     0.612
PSHAa0719
Homologs of previously reported genes of unknown function.
  
     0.607
PSHAa0863
Homologs of previously reported genes of unknown function.
  
     0.575
PSHAa2457
Putative TonB-dependent receptor; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; transporter.
  
     0.552
PSHAa0850
Putative transcriptional activator IlvY (LysR family); Function of homologous gene experimentally demonstrated in an other organism; regulator; Belongs to the LysR transcriptional regulatory family.
       0.526
Your Current Organism:
Pseudoalteromonas haloplanktis
NCBI taxonomy Id: 326442
Other names: P. haloplanktis TAC125, Pseudoalteromonas haloplanktis TAC125, Pseudoalteromonas haloplanktis str. TAC125, Pseudoalteromonas haloplanktis strain TAC125
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