Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ampCPutative beta-lactamase precursor; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; enzyme. (381 aa)    
Predicted Functional Partners:
PSHAa0866
Putative orphan protein; No homology to any previously reported sequences.
       0.773
PSHAa0864
Putative orphan protein; No homology to any previously reported sequences.
       0.763
bcsZ
Endoglucanase precursor (Endo-1, 4-beta-glucanase) (Cellulase) (Carboxymethylcellulase) (CMCase); Function of homologous gene experimentally demonstrated in an other organism; enzyme.
      
 0.755
PSHAa0861
Putative transcriptional regulatory protein RstA; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; regulator.
     
 0.609
proC
Pyrroline-5-carboxylate reductase (NAD(P)-binding); Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline.
     
 0.596
ampD
N-acetyl-anhydromuramyl-L-alanine amidase; Function of strongly homologous gene; enzyme.
      
 0.576
PSHAa0862
Putative orphan protein; No homology to any previously reported sequences.
       0.556
murB
UDP-N-acetylenolpyruvoylglucosamine reductase; Cell wall formation.
     
 0.547
nagZ
Beta-hexosaminidase A (N-acetyl-beta-glucosaminidase) (Beta-N-acetylhexosaminidase) (Chitobiase); Function of homologous gene experimentally demonstrated in an other organism; enzyme; Belongs to the glycosyl hydrolase 3 family.
 
  
 0.539
PSHAa2457
Putative TonB-dependent receptor; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; transporter.
  
     0.466
Your Current Organism:
Pseudoalteromonas haloplanktis
NCBI taxonomy Id: 326442
Other names: P. haloplanktis TAC125, Pseudoalteromonas haloplanktis TAC125, Pseudoalteromonas haloplanktis str. TAC125, Pseudoalteromonas haloplanktis strain TAC125
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