STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PSHAa0866Putative orphan protein; No homology to any previously reported sequences. (173 aa)    
Predicted Functional Partners:
ampC
Putative beta-lactamase precursor; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; enzyme.
       0.777
PSHAa2494
Putative orphan protein; No homology to any previously reported sequences.
 
     0.700
PSHAa0464
Homologs of previously reported genes of unknown function.
  
     0.694
PSHAa1171
Homologs of previously reported genes of unknown function.
  
     0.688
PSHAa1696
Leucine aminopeptidase-related protein; Function of strongly homologous gene; enzyme.
  
     0.666
PSHAa2859
Homologs of previously reported genes of unknown function.
  
     0.648
PSHAa2889
Putative secreted protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy.
  
     0.629
PSHAa2185
Putative amidohydrolase family; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; enzyme.
  
     0.567
PSHAa1729
Homologs of previously reported genes of unknown function.
  
     0.560
PSHAa0864
Putative orphan protein; No homology to any previously reported sequences.
       0.539
Your Current Organism:
Pseudoalteromonas haloplanktis
NCBI taxonomy Id: 326442
Other names: P. haloplanktis TAC125, Pseudoalteromonas haloplanktis TAC125, Pseudoalteromonas haloplanktis str. TAC125, Pseudoalteromonas haloplanktis strain TAC125
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