STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PSHAa0876Homologs of previously reported genes of unknown function; transporter. (785 aa)    
Predicted Functional Partners:
PSHAb0158
Putative TonB-dependent receptor with TonB-box; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; receptor.
  
   
 0.673
TonB2
TonB2 protein; Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy-requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins. Belongs to the TonB family.
 
 
 0.672
PSHAa1840
Putative TonB-dependent receptor; Function of strongly homologous gene; receptor.
  
  
 0.663
PSHAb0524
Putative TonB2 protein; Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy-requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins. Belongs to the TonB family.
 
 
 0.640
PSHAa2275
Putative TonB-dependent Outer membrane receptor; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; receptor.
  
   
 0.619
teiR
LuxR-type transcription regulator required for testosterone degradation; Function of homologous gene experimentally demonstrated in an other organism; regulator.
  
     0.612
PSHAa0528
Homologs of previously reported genes of unknown function; transporter.
 
 
 0.591
PSHAb0069
Putative membrane protein with TonB domain; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; membrane component.
 
 
 0.584
PSHAb0299
Putative TonB-dependent outer membrane receptor; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; receptor.
  
    0.573
PSHAa1987
Putative TonB-dependent receptor protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; receptor.
  
   
 0.546
Your Current Organism:
Pseudoalteromonas haloplanktis
NCBI taxonomy Id: 326442
Other names: P. haloplanktis TAC125, Pseudoalteromonas haloplanktis TAC125, Pseudoalteromonas haloplanktis str. TAC125, Pseudoalteromonas haloplanktis strain TAC125
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