STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
PSHAa0876Homologs of previously reported genes of unknown function; transporter. (785 aa)    
Predicted Functional Partners:
PSHAb0158
Putative TonB-dependent receptor with TonB-box; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; receptor.
  
     0.673
TonB2
TonB2 protein; Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy-requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins. Belongs to the TonB family.
 
 
 0.641
PSHAa1840
Putative TonB-dependent receptor; Function of strongly homologous gene; receptor.
  
   
 0.632
PSHAa2275
Putative TonB-dependent Outer membrane receptor; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; receptor.
  
   
 0.626
teiR
LuxR-type transcription regulator required for testosterone degradation; Function of homologous gene experimentally demonstrated in an other organism; regulator.
  
     0.612
PSHAb0524
Putative TonB2 protein; Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy-requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins. Belongs to the TonB family.
 
 
 0.606
PSHAa0528
Homologs of previously reported genes of unknown function; transporter.
 
   0.568
PSHAa1987
Putative TonB-dependent receptor protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; receptor.
  
     0.546
PSHAb0299
Putative TonB-dependent outer membrane receptor; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; receptor.
  
    0.545
PSHAb0069
Putative membrane protein with TonB domain; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; membrane component.
 
 
 0.544
Your Current Organism:
Pseudoalteromonas haloplanktis
NCBI taxonomy Id: 326442
Other names: P. haloplanktis TAC125, Pseudoalteromonas haloplanktis TAC125, Pseudoalteromonas haloplanktis str. TAC125, Pseudoalteromonas haloplanktis strain TAC125
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