Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
PSHAa0925Homologs of previously reported genes of unknown function. (331 aa)    
Predicted Functional Partners:
PSHAa0924
Putative type IV pilus biogenesis protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; membrane component.
 
  
 0.997
PSHAa0927
Homologs of previously reported genes of unknown function.
 
  
 0.992
pilE
Putative fimbrial protein precursor; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy.
 
  
 0.971
PSHAa0926
Homologs of previously reported genes of unknown function.
  
  
 0.958
PSHAa0929
Putative Type IV pilus biogenesis protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; membrane component.
 
  
 0.815
pilP
Putative Type IV pilus biogenesis protein PilP; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; structural protein.
  
  
 0.802
PSHAa0930
Putative Type IV pilus biogenesis protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; membrane component.
 
  
 0.785
algR
Putative alginate biosynthesis regulatory protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; regulator.
 
   
 0.781
pilO
Putative Type IV pilus biogenesis protein PilO; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; structural protein.
 
  
 0.759
algZ
Putative alginate biosynthesis protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; regulator.
       0.735
Your Current Organism:
Pseudoalteromonas haloplanktis
NCBI taxonomy Id: 326442
Other names: P. haloplanktis TAC125, Pseudoalteromonas haloplanktis TAC125, Pseudoalteromonas haloplanktis str. TAC125, Pseudoalteromonas haloplanktis strain TAC125
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