Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
PSHAa0927Homologs of previously reported genes of unknown function. (1056 aa)    
Predicted Functional Partners:
PSHAa0925
Homologs of previously reported genes of unknown function.
 
  
 0.992
PSHAa0924
Putative type IV pilus biogenesis protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; membrane component.
 
  
 0.989
pilE
Putative fimbrial protein precursor; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy.
 
  
 0.983
PSHAa0926
Homologs of previously reported genes of unknown function.
  
  
 0.942
PSHAa0930
Putative Type IV pilus biogenesis protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; membrane component.
 
  
 0.766
PSHAa0929
Putative Type IV pilus biogenesis protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; membrane component.
 
  
 0.748
algR
Putative alginate biosynthesis regulatory protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; regulator.
     
 0.733
mshP
Putative Mannose-sensitive agglutinin (MSHA) biogenesis protein MshP (pilus type IV); Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; 11985966.
  
  
 0.725
algZ
Putative alginate biosynthesis protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; regulator.
     
 0.701
pilM
Putative Type IV pilus biogenesis protein PilM; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; structural protein.
 
   
 0.686
Your Current Organism:
Pseudoalteromonas haloplanktis
NCBI taxonomy Id: 326442
Other names: P. haloplanktis TAC125, Pseudoalteromonas haloplanktis TAC125, Pseudoalteromonas haloplanktis str. TAC125, Pseudoalteromonas haloplanktis strain TAC125
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