STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PSHAa0953Putative anti-sigma factor antagonist; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; factor; Belongs to the anti-sigma-factor antagonist family. (101 aa)    
Predicted Functional Partners:
PSHAa0954
Putative response regulator; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; regulator.
 
 0.998
flgJ
Putative flagellar biosynthesis; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; structural protein.
  
    0.943
PSHAa2544
Putative transport protein (ABC superfamily, atp-binding); Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; transporter.
   
   0.934
PSHAb0289
Putative two-component hybrid sensor and regulator; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; regulator.
  
  
 0.933
PSHAa0654
Homologs of previously reported genes of unknown function.
  
  
 0.927
flgE
Flagellar biosynthesis; Function of strongly homologous gene; structural protein.
   
    0.923
PSHAa2542
Putative transport protein (ABC superfamily, periplasmic binding component); Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; transporter.
  
   0.923
PSHAa2543
Putative transport protein (ABC superfamily, membrane); Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; transporter.
   
   0.920
flgM
Putative negative regulator of flagellin synthesis; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; regulator.
  
  
  0.919
barA
Sensor protein barA; Function of strongly homologous gene; regulator.
  
  
 0.847
Your Current Organism:
Pseudoalteromonas haloplanktis
NCBI taxonomy Id: 326442
Other names: P. haloplanktis TAC125, Pseudoalteromonas haloplanktis TAC125, Pseudoalteromonas haloplanktis str. TAC125, Pseudoalteromonas haloplanktis strain TAC125
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.