Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
PSHAa0954Putative response regulator; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; regulator. (549 aa)    
Predicted Functional Partners:
PSHAa0953
Putative anti-sigma factor antagonist; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; factor; Belongs to the anti-sigma-factor antagonist family.
 
 0.998
PSHAa0654
Homologs of previously reported genes of unknown function.
 
  
0.941
PSHAb0289
Putative two-component hybrid sensor and regulator; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; regulator.
 
  
0.931
flgJ
Putative flagellar biosynthesis; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; structural protein.
  
    0.921
PSHAa0077
Putative sensor protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; receptor.
 
  
0.883
fliM
Flagellar biosynthesis; FliM is one of three proteins (FliG, FliN, FliM) that forms the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation.
 
    0.864
PSHAa2919
Putative control sensor/kinase protein (ArcB, TorS, ChiS, LuxQ, BvgS family); Function of strongly homologous gene; receptor.
 
  
 0.840
arcB
Aerobic respiration control sensor protein arcB; Function of strongly homologous gene; regulator.
 
  
 0.835
PSHAa1151
Putative two-component member protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; membrane component.
 
  
0.764
PSHAa0111
Putative membrane bound sensor or esterase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy.
 
  
0.762
Your Current Organism:
Pseudoalteromonas haloplanktis
NCBI taxonomy Id: 326442
Other names: P. haloplanktis TAC125, Pseudoalteromonas haloplanktis TAC125, Pseudoalteromonas haloplanktis str. TAC125, Pseudoalteromonas haloplanktis strain TAC125
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