STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
aspCAspartate aminotransferase (Transaminase A) (ASPAT); Function of homologous gene experimentally demonstrated in an other organism; enzyme. (397 aa)    
Predicted Functional Partners:
melA
4-hydroxyphenylpyruvate dioxygenase (4HPPD) (HPD) (HPPDase); Function of homologous gene experimentally demonstrated in an other organism; enzyme.
  
 
 0.965
pheA
Bifunctional protein [Includes: chorismate mutase P (N-terminal); Function of homologous gene experimentally demonstrated in an other organism; enzyme.
    
 0.963
tyrA
Bifunctional protein [Includes: chorismate mutase T (N-terminal); Function of homologous gene experimentally demonstrated in an other organism; enzyme.
    
 0.962
mdh
Malate dehydrogenase, NAD(P)-binding; Catalyzes the reversible oxidation of malate to oxaloacetate.
   
 0.962
phhA
Phenylalanine-4-hydroxylase (EC 1.14.16.1) (PAH) (Phe-4-monooxygenase); Function of homologous gene experimentally demonstrated in an other organism; enzyme.
  
 
 0.959
gdhA
Glutamate dehydrogenase, NADP-specific; Function of strongly homologous gene; enzyme; Belongs to the Glu/Leu/Phe/Val dehydrogenases family.
   
 0.952
yfbQ
Putative PLP-dependent aminotransferase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; enzyme.
   
 0.935
hisC
Histidinol phosphate aminotransferase; Function of homologous gene experimentally demonstrated in an other organism; enzyme.
   
 
 0.932
asnB
Asparagine synthetase B[glutamine-hydrolyzing]; Function of homologous gene experimentally demonstrated in an other organism; enzyme.
   
 0.926
argHA
Argininosuccinate lyase; Function of homologous gene experimentally demonstrated in an other organism; enzyme; In the N-terminal section; belongs to the lyase 1 family. Argininosuccinate lyase subfamily.
   
 
 0.926
Your Current Organism:
Pseudoalteromonas haloplanktis
NCBI taxonomy Id: 326442
Other names: P. haloplanktis TAC125, Pseudoalteromonas haloplanktis TAC125, Pseudoalteromonas haloplanktis str. TAC125, Pseudoalteromonas haloplanktis strain TAC125
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