Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
PSHAa0957Homologs of previously reported genes of unknown function. (283 aa)    
Predicted Functional Partners:
PSHAa0958
Homologs of previously reported genes of unknown function.
       0.536
PSHAa0959
RNA polymerase sigma factor; Function of strongly homologous gene; factor; Belongs to the sigma-70 factor family. ECF subfamily.
       0.536
PSHAa1798
Homologs of previously reported genes of unknown function.
  
     0.454
PSHAa2748
Putative transport protein (ABC superfamily, ATP-binding); Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; transporter; Belongs to the UPF0307 family.
  
     0.444
PSHAa1799
Homologs of previously reported genes of unknown function.
  
     0.416
PSHAa1241
Homologs of previously reported genes of unknown function.
  
     0.401
Your Current Organism:
Pseudoalteromonas haloplanktis
NCBI taxonomy Id: 326442
Other names: P. haloplanktis TAC125, Pseudoalteromonas haloplanktis TAC125, Pseudoalteromonas haloplanktis str. TAC125, Pseudoalteromonas haloplanktis strain TAC125
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