STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
PSHAa0972Putative peptidase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; enzyme; Belongs to the peptidase M16 family. (907 aa)    
Predicted Functional Partners:
PSHAa0971
Homologs of previously reported genes of unknown function.
       0.784
sixA
Phosphohistidine phosphatase; Function of homologous gene experimentally demonstrated in an other organism; enzyme.
 
     0.773
PSHAa0761
Homologs of previously reported genes of unknown function.
  
     0.602
PSHAa2305
Putative orphan protein; No homology to any previously reported sequences.
  
     0.533
gltX
Glutamyl-tRNA synthetase (Glutamate-tRNA ligase); Catalyzes the attachment of glutamate to tRNA(Glu) in a two- step reaction: glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu); Belongs to the class-I aminoacyl-tRNA synthetase family. Glutamate--tRNA ligase type 1 subfamily.
  
     0.482
mshD
Putative Mannose-sensitive agglutinin (MSHA) biogenesis protein MshD (pilus type IV); Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; 11985966.
 
     0.431
grxA
Glutaredoxin 1 redox coenzyme for glutathione-dependent ribonucleotide reductase; Function of homologous gene experimentally demonstrated in an other organism; carrier.
  
     0.427
PSHAa0762
Homologs of previously reported genes of unknown function.
  
     0.424
PSHAa0974
Homologs of previously reported genes of unknown function.
       0.419
PSHAa0819
Homologs of previously reported genes of unknown function.
 
     0.413
Your Current Organism:
Pseudoalteromonas haloplanktis
NCBI taxonomy Id: 326442
Other names: P. haloplanktis TAC125, Pseudoalteromonas haloplanktis TAC125, Pseudoalteromonas haloplanktis str. TAC125, Pseudoalteromonas haloplanktis strain TAC125
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