Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
PSHAa0986Homologs of previously reported genes of unknown function. (184 aa)    
Predicted Functional Partners:
PSHAa0987
Homologs of previously reported genes of unknown function.
       0.868
PSHAa0988
Homologs of previously reported genes of unknown function.
  
    0.828
PSHAa1992
Conserved protein of unknown functions similar to YfcA; Homologs of previously reported genes of unknown function.
 
    0.727
kamA
Putative lysine 2,3 aminomutase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; enzyme.
  
   
 0.709
PSHAa0989
Putative transporter; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; transporter.
       0.621
efp
Elongation factor P (EF-P); Involved in peptide bond synthesis. Alleviates ribosome stalling that occurs when 3 or more consecutive Pro residues or the sequence PPG is present in a protein, possibly by augmenting the peptidyl transferase activity of the ribosome. Modification of Lys-34 is required for alleviation; Belongs to the elongation factor P family.
  
   
 0.567
epmA
Putative fold recognizing lysyl-tRNA; With EpmB is involved in the beta-lysylation step of the post-translational modification of translation elongation factor P (EF- P). Catalyzes the ATP-dependent activation of (R)-beta-lysine produced by EpmB, forming a lysyl-adenylate, from which the beta-lysyl moiety is then transferred to the epsilon-amino group of a conserved specific lysine residue in EF-P; Belongs to the class-II aminoacyl-tRNA synthetase family. EpmA subfamily.
  
   
 0.500
PSHAa2590
Homologs of previously reported genes of unknown function.
  
     0.459
PSHAa1370
Conserved protein of unknown function in gamma-proteobacteria; Homologs of previously reported genes of unknown function.
  
     0.423
PSHAa0985
Putative orphan protein; No homology to any previously reported sequences.
       0.412
Your Current Organism:
Pseudoalteromonas haloplanktis
NCBI taxonomy Id: 326442
Other names: P. haloplanktis TAC125, Pseudoalteromonas haloplanktis TAC125, Pseudoalteromonas haloplanktis str. TAC125, Pseudoalteromonas haloplanktis strain TAC125
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