Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
deaDATP-dependent RNA helicase, cold shock protein A; DEAD-box RNA helicase involved in various cellular processes at low temperature, including ribosome biogenesis, mRNA degradation and translation initiation. (616 aa)    
Predicted Functional Partners:
yciO
Putative RNA binding protein with YrdC/RibB domain; Homologs of previously reported genes of unknown function; factor; Belongs to the SUA5 family.
  
    0.973
PSHAb0119
Putative helicase (recQ-like); Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; enzyme.
 
 
0.920
recQ
ATP-dependent DNA helicase; Function of homologous gene experimentally demonstrated in an other organism; enzyme.
 
 
0.917
rpoZ
DNA-directed RNA polymerase subunit omega; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.
   
 
 0.832
cspE-3
Function of homologous gene experimentally demonstrated in an other organism; molecular chaperone.
   
 0.716
pnp
Polynucleotide phosphorylase, has polyadenylase activity; Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'- direction.
  
 
 0.689
cspC
Cold shock protein, transcription antiterminator, affects expression of rpoS and uspA; Function of homologous gene experimentally demonstrated in an other organism; factor.
   
 0.617
cspE
RNA chaperone, transcription antiterminator, affects expression of rpoS and uspA; Function of homologous gene experimentally demonstrated in an other organism; molecular chaperone.
   
 0.617
cspE-2
RNA chaperone, transcription antiterminator, affects expression of rpoS and uspA; Function of homologous gene experimentally demonstrated in an other organism; molecular chaperone.
   
 0.617
cspD
Nucleic acid-binding domain, cold-shock RNA chaperone; Function of strongly homologous gene; phenotype.
   
 0.590
Your Current Organism:
Pseudoalteromonas haloplanktis
NCBI taxonomy Id: 326442
Other names: P. haloplanktis TAC125, Pseudoalteromonas haloplanktis TAC125, Pseudoalteromonas haloplanktis str. TAC125, Pseudoalteromonas haloplanktis strain TAC125
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