Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
PSHAa0994Homologs of previously reported genes of unknown function. (517 aa)    
Predicted Functional Partners:
PSHAa2200
Putative deoxyribodipyrimidine photolyase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; enzyme; Belongs to the DNA photolyase family.
 
   
 0.817
PSHAa1278
Putative epimerase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; enzyme.
      0.695
PSHAb0311
Homologs of previously reported genes of unknown function.
 
  
 0.650
PSHAa2405
Homologs of previously reported genes of unknown function.
 
     0.634
PSHAb0461
Homologs of previously reported genes of unknown function.
 
     0.599
phr
Putative deoxyribodipyrimidine photolyase; Function of homologous gene experimentally demonstrated in an other organism; enzyme; Belongs to the DNA photolyase family.
 
   
 0.594
PSHAb0035
Putative transcriptional regulator (MarR family); Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; regulator.
   
    0.590
PSHAb0457
Homologs of previously reported genes of unknown function.
 
   
 0.569
PSHAb0456
Homologs of previously reported genes of unknown function.
 
   
 0.564
PSHAb0454
Homologs of previously reported genes of unknown function.
 
   
 0.479
Your Current Organism:
Pseudoalteromonas haloplanktis
NCBI taxonomy Id: 326442
Other names: P. haloplanktis TAC125, Pseudoalteromonas haloplanktis TAC125, Pseudoalteromonas haloplanktis str. TAC125, Pseudoalteromonas haloplanktis strain TAC125
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