Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
PSHAa1003Putative orphan protein; No homology to any previously reported sequences. (390 aa)    
Predicted Functional Partners:
nlpI
Lipoprotein probably involved in cell division after interaction with a protease; May be involved in cell division.
       0.868
pnp
Polynucleotide phosphorylase, has polyadenylase activity; Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'- direction.
       0.704
PSHAa1004
Putative NADH dehydrogenase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; enzyme.
       0.704
PSHAa1005
Putative pH adaptation potassium efflux protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; transporter.
       0.669
PSHAa1006
Putative NADH dehydrogenase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; enzyme.
       0.669
PSHAa1007
Putative potassium efflux system protein PhaE; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; transporter.
       0.669
PSHAa1008
Putative pH adaptation potassium efflux system protein F; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; transporter.
       0.669
PSHAa1009
Putative multiple resistance/pH regulation related protein G; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; transporter.
       0.667
flgC
Flagellar biosynthesis; Function of strongly homologous gene; structural protein; Belongs to the flagella basal body rod proteins family.
   
 
 0.525
kdkA
Putative lipopolysaccharide kinase family; Catalyzes the ATP-dependent phosphorylation of the 3-deoxy-D- manno-octulosonic acid (Kdo) residue in Kdo-lipid IV(A) at the 4-OH position; Belongs to the protein kinase superfamily. KdkA/RfaP family.
    
 0.511
Your Current Organism:
Pseudoalteromonas haloplanktis
NCBI taxonomy Id: 326442
Other names: P. haloplanktis TAC125, Pseudoalteromonas haloplanktis TAC125, Pseudoalteromonas haloplanktis str. TAC125, Pseudoalteromonas haloplanktis strain TAC125
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