STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PSHAa1017Homologs of previously reported genes of unknown function. (545 aa)    
Predicted Functional Partners:
PSHAb0158
Putative TonB-dependent receptor with TonB-box; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; receptor.
  
     0.636
PSHAa2386
Dipeptidyl peptidase IV; Function of homologous gene experimentally demonstrated in an other organism; enzyme.
  
    0.534
PSHAa1568
Putative enzymatic protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; enzyme.
  
    0.525
PSHAa0428
Putative TonB-dependent receptor; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; membrane component.
  
     0.524
PSHAa1840
Putative TonB-dependent receptor; Function of strongly homologous gene; receptor.
  
     0.509
PSHAb0005
Dipeptidyl-peptidase IV; Function of strongly homologous gene; enzyme.
  
    0.498
PSHAb0474
Homologs of previously reported genes of unknown function.
 
  
 0.483
PSHAb0473
Homologs of previously reported genes of unknown function.
 
  
 0.470
PSHAa2915
Putative cold-active aminopeptidase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; enzyme.
  
 
 
 0.467
PSHAb0057
Putative Zn-dependent aminopeptidase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; enzyme.
  
 
 
 0.457
Your Current Organism:
Pseudoalteromonas haloplanktis
NCBI taxonomy Id: 326442
Other names: P. haloplanktis TAC125, Pseudoalteromonas haloplanktis TAC125, Pseudoalteromonas haloplanktis str. TAC125, Pseudoalteromonas haloplanktis strain TAC125
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.