Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
PSHAa1038Putative protease; Degrades oligopeptides; Belongs to the peptidase S41B family. (1080 aa)    
Predicted Functional Partners:
PSHAa2646
Homologs of previously reported genes of unknown function.
  
    0.677
PSHAa0132
Putative secreted hydrolase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; enzyme.
  
     0.646
PSHAb0238
Homologs of previously reported genes of unknown function.
 
  
 0.600
PSHAb0063
Putative peptidase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; enzyme.
  
    0.593
oadA
Oxaloacetate decarboxylase, alpha subunit; Function of strongly homologous gene; enzyme.
  
    0.535
PSHAa1039
Homologs of previously reported genes of unknown function.
       0.496
nlpI
Lipoprotein probably involved in cell division after interaction with a protease; May be involved in cell division.
    
 
 0.473
PSHAb0235
Putative enzyme; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; enzyme.
  
    0.464
PSHAa0960
Homologs of previously reported genes of unknown function.
  
 
 0.450
PSHAb0239
Putative orphan protein; No homology to any previously reported sequences.
  
     0.449
Your Current Organism:
Pseudoalteromonas haloplanktis
NCBI taxonomy Id: 326442
Other names: P. haloplanktis TAC125, Pseudoalteromonas haloplanktis TAC125, Pseudoalteromonas haloplanktis str. TAC125, Pseudoalteromonas haloplanktis strain TAC125
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