STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
PSHAa1065Homologs of previously reported genes of unknown function. (209 aa)    
Predicted Functional Partners:
gcvA
Transcriptional regulator (postitive) of cleavage of glycine (LysR family); Function of homologous gene experimentally demonstrated in an other organism; factor; Belongs to the LysR transcriptional regulatory family.
      0.894
PSHAa1066
Homologs of previously reported genes of unknown function.
       0.787
ygdE
RNA 2'-O-ribose methyltransferase, SAM-dependent domain; Catalyzes the 2'-O-methylation at nucleotide C2498 in 23S rRNA; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA methyltransferase RlmE family. RlmM subfamily.
       0.784
kdsA
3-deoxy-D-manno-octulosonic acid 8-P synthetase; Function of homologous gene experimentally demonstrated in an other organism; enzyme; Belongs to the KdsA family.
       0.750
PSHAa1062
Homologs of previously reported genes of unknown function.
       0.670
thiDE
Putative phosphomethylpyrimidine kinase/thiamin-phosphate pyrophosphorylase; Condenses 4-methyl-5-(beta-hydroxyethyl)thiazole monophosphate (THZ-P) and 2-methyl-4-amino-5-hydroxymethyl pyrimidine pyrophosphate (HMP-PP) to form thiamine monophosphate (TMP). Belongs to the thiamine-phosphate synthase family.
  
    0.592
PSHAa1061
Homologs of previously reported genes of unknown function; regulator.
       0.557
PSHAa1060
Homologs of previously reported genes of unknown function; regulator.
       0.404
Your Current Organism:
Pseudoalteromonas haloplanktis
NCBI taxonomy Id: 326442
Other names: P. haloplanktis TAC125, Pseudoalteromonas haloplanktis TAC125, Pseudoalteromonas haloplanktis str. TAC125, Pseudoalteromonas haloplanktis strain TAC125
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