Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-occurrence
Co-expression
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[Homology]
Score
ygdERNA 2'-O-ribose methyltransferase, SAM-dependent domain; Catalyzes the 2'-O-methylation at nucleotide C2498 in 23S rRNA; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA methyltransferase RlmE family. RlmM subfamily. (361 aa)    
Predicted Functional Partners:
PSHAa1066
Homologs of previously reported genes of unknown function.
  
  
 0.943
gcvA
Transcriptional regulator (postitive) of cleavage of glycine (LysR family); Function of homologous gene experimentally demonstrated in an other organism; factor; Belongs to the LysR transcriptional regulatory family.
      0.857
PSHAa1065
Homologs of previously reported genes of unknown function.
       0.784
PSHAa1061
Homologs of previously reported genes of unknown function; regulator.
 
     0.758
kdsA
3-deoxy-D-manno-octulosonic acid 8-P synthetase; Function of homologous gene experimentally demonstrated in an other organism; enzyme; Belongs to the KdsA family.
       0.695
PSHAa1062
Homologs of previously reported genes of unknown function.
       0.693
PSHAa1817
Putative nucleotide associated protein, present in spermidine nucleoids; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; structural protein.
  
    0.619
PSHAa1655
Putative SufE protein; Function of homologous gene experimentally demonstrated in an other organism.
 
    0.468
nfuA
Conserved protein of unknown function; Involved in iron-sulfur cluster biogenesis. Binds a 4Fe-4S cluster, can transfer this cluster to apoproteins, and thereby intervenes in the maturation of Fe/S proteins. Could also act as a scaffold/chaperone for damaged Fe/S proteins.
  
     0.451
queD
Putative queD protein; Catalyzes the NADPH-dependent reduction of 7-cyano-7- deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1).
 
    0.442
Your Current Organism:
Pseudoalteromonas haloplanktis
NCBI taxonomy Id: 326442
Other names: P. haloplanktis TAC125, Pseudoalteromonas haloplanktis TAC125, Pseudoalteromonas haloplanktis str. TAC125, Pseudoalteromonas haloplanktis strain TAC125
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