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Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
speAArginine decarboxylase, PLP-binding, biosynthetic; Catalyzes the biosynthesis of agmatine from arginine. (637 aa)    
Predicted Functional Partners:
speB
Agmatinase; Function of homologous gene experimentally demonstrated in an other organism; enzyme; Belongs to the arginase family.
 
 
 0.987
PSHAb0317
Putative manganese binding agmatinase (SpeB); Function of strongly homologous gene; enzyme; Belongs to the arginase family.
 
 
 0.930
PSHAa1094
Putative basic aminoacid decarboxylase (could be ornithine decarboxylase); Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; enzyme.
     
 0.919
speA-2
Arginine decarboxylase, PLP-binding, biosynthetic; Catalyzes the biosynthesis of agmatine from arginine. Belongs to the Orn/Lys/Arg decarboxylase class-II family. SpeA subfamily.
  
  
 
0.904
astA
Arginine succinyltransferase; Function of strongly homologous gene; enzyme.
     
  0.900
PSHAb0427
Putative arginine succinyltransferase; Function of strongly homologous gene; enzyme.
     
  0.900
argHA
Argininosuccinate lyase; Function of homologous gene experimentally demonstrated in an other organism; enzyme; In the N-terminal section; belongs to the lyase 1 family. Argininosuccinate lyase subfamily.
     
 0.816
PSHAa1834
Homologs of previously reported genes of unknown function; Belongs to the agmatine deiminase family.
 
   
 0.546
PSHAa1835
Beta-ureidopropionase; Function of strongly homologous gene; enzyme.
 
  
 0.449
fabD
malonyl-CoA-[acyl-carrier-protein] transacylase; Function of strongly homologous gene; enzyme.
   
    0.441
Your Current Organism:
Pseudoalteromonas haloplanktis
NCBI taxonomy Id: 326442
Other names: P. haloplanktis TAC125, Pseudoalteromonas haloplanktis TAC125, Pseudoalteromonas haloplanktis str. TAC125, Pseudoalteromonas haloplanktis strain TAC125
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