fit to screen
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
speBAgmatinase; Function of homologous gene experimentally demonstrated in an other organism; enzyme; Belongs to the arginase family. (307 aa)    
Predicted Functional Partners:
speA
Arginine decarboxylase, PLP-binding, biosynthetic; Catalyzes the biosynthesis of agmatine from arginine.
 
 
 0.987
speA-2
Arginine decarboxylase, PLP-binding, biosynthetic; Catalyzes the biosynthesis of agmatine from arginine. Belongs to the Orn/Lys/Arg decarboxylase class-II family. SpeA subfamily.
 
 
 0.945
speE
Spermidine synthase (EC 2.5.1.16) (Putrescine aminopropyltransferase) (SPDSY); Catalyzes the irreversible transfer of a propylamine group from the amino donor S-adenosylmethioninamine (decarboxy-AdoMet) to putrescine (1,4-diaminobutane) to yield spermidine.
  
 
 0.940
PSHAb0317
Putative manganese binding agmatinase (SpeB); Function of strongly homologous gene; enzyme; Belongs to the arginase family.
  
  
 
0.928
PSHAa1094
Putative basic aminoacid decarboxylase (could be ornithine decarboxylase); Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; enzyme.
    
 0.926
PSHAa0173
Homologs of previously reported genes of unknown function; enzyme.
  
 
 0.922
speE-3
Putative spermine/spermidine synthase protein; Catalyzes the irreversible transfer of a propylamine group from the amino donor S-adenosylmethioninamine (decarboxy-AdoMet) to putrescine (1,4-diaminobutane) to yield spermidine; Belongs to the spermidine/spermine synthase family.
  
 
 0.922
PSHAa1835
Beta-ureidopropionase; Function of strongly homologous gene; enzyme.
   
 0.921
speE-2
Putative spermine/spermidine synthase family protein; Catalyzes the irreversible transfer of a propylamine group from the amino donor S-adenosylmethioninamine (decarboxy-AdoMet) to putrescine (1,4-diaminobutane) to yield spermidine.
     
  0.900
hutH
Histidine ammonia-lyase; Function of homologous gene experimentally demonstrated in an other organism; enzyme.
  
  
 0.526
Your Current Organism:
Pseudoalteromonas haloplanktis
NCBI taxonomy Id: 326442
Other names: P. haloplanktis TAC125, Pseudoalteromonas haloplanktis TAC125, Pseudoalteromonas haloplanktis str. TAC125, Pseudoalteromonas haloplanktis strain TAC125
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.