Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
aaeXHomologs of previously reported genes of unknown function. (69 aa)    
Predicted Functional Partners:
PSHAa1078
Putative secretion protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; transporter; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
       0.787
PSHAa1079
Putative orphan protein; No homology to any previously reported sequences.
     
 0.644
PSHAa1080
RNA methyltransferase, TrmH family; Function of homologous gene experimentally demonstrated in an other organism; enzyme.
       0.507
speA
Arginine decarboxylase, PLP-binding, biosynthetic; Catalyzes the biosynthesis of agmatine from arginine.
       0.424
speB
Agmatinase; Function of homologous gene experimentally demonstrated in an other organism; enzyme; Belongs to the arginase family.
       0.424
smc
Putative SMC family protein; Required for chromosome condensation and partitioning. Belongs to the SMC family.
       0.409
Your Current Organism:
Pseudoalteromonas haloplanktis
NCBI taxonomy Id: 326442
Other names: P. haloplanktis TAC125, Pseudoalteromonas haloplanktis TAC125, Pseudoalteromonas haloplanktis str. TAC125, Pseudoalteromonas haloplanktis strain TAC125
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