Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
PSHAa1079Putative orphan protein; No homology to any previously reported sequences. (658 aa)    
Predicted Functional Partners:
PSHAa1078
Putative secretion protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; transporter; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
  
 0.917
iscU
Fe-S assembly protein; A scaffold on which IscS assembles Fe-S clusters. It is likely that Fe-S cluster coordination is flexible as the role of this complex is to build and then hand off Fe-S clusters.
   
    0.834
PSHAa1080
RNA methyltransferase, TrmH family; Function of homologous gene experimentally demonstrated in an other organism; enzyme.
       0.689
aaeX
Homologs of previously reported genes of unknown function.
     
 0.644
cyoD
Cytochrome o ubiquinol oxidase protein (Ubiquinol oxidase chain D); Function of homologous gene experimentally demonstrated in an other organism; enzyme.
  
     0.635
smc
Putative SMC family protein; Required for chromosome condensation and partitioning. Belongs to the SMC family.
       0.543
PSHAa1603
Putative orphan protein; No homology to any previously reported sequences.
  
     0.476
cyoA
Ubiquinol oxidase subunit 2; Function of homologous gene experimentally demonstrated in an other organism; enzyme.
  
     0.461
PSHAb0036
Putative efflux pump or secretion protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; carrier.
 
  
 0.445
zipA
Putative Cell division protein zipA homolog; Essential cell division protein that stabilizes the FtsZ protofilaments by cross-linking them and that serves as a cytoplasmic membrane anchor for the Z ring. Also required for the recruitment to the septal ring of downstream cell division proteins.
       0.416
Your Current Organism:
Pseudoalteromonas haloplanktis
NCBI taxonomy Id: 326442
Other names: P. haloplanktis TAC125, Pseudoalteromonas haloplanktis TAC125, Pseudoalteromonas haloplanktis str. TAC125, Pseudoalteromonas haloplanktis strain TAC125
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