STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PSHAa1173Homologs of previously reported genes of unknown function. (250 aa)    
Predicted Functional Partners:
PSHAa1443
Homologs of previously reported genes of unknown function; regulator.
 
  
 0.900
PSHAa1442
Putative allophanate hydrolase; Function of strongly homologous gene; enzyme.
 
  
 0.851
PSHAb0064
Putative lactam utilization protein B; Catalyzes the cleavage of 5-oxoproline to form L-glutamate coupled to the hydrolysis of ATP to ADP and inorganic phosphate.
    
 0.685
nlpI
Lipoprotein probably involved in cell division after interaction with a protease; May be involved in cell division.
   
    0.607
PSHAa1172
Putative orphan protein; No homology to any previously reported sequences.
       0.578
PSHAa0059
Putative transcriptional regulator YdcR (GntR family); Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; regulator.
   
    0.520
metG
methionyl-tRNA synthetase; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation.
 
  
 0.473
Your Current Organism:
Pseudoalteromonas haloplanktis
NCBI taxonomy Id: 326442
Other names: P. haloplanktis TAC125, Pseudoalteromonas haloplanktis TAC125, Pseudoalteromonas haloplanktis str. TAC125, Pseudoalteromonas haloplanktis strain TAC125
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