STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PSHAa1196Putative orphan protein; No homology to any previously reported sequences; membrane component. (178 aa)    
Predicted Functional Partners:
PSHAa1198
Homologs of previously reported genes of unknown function.
 
  
 0.960
PSHAa1197
Homologs of previously reported genes of unknown function.
 
  
 0.959
PSHAa1347
Conserved putatively secreted protein of unknown function; Homologs of previously reported genes of unknown function.
  
     0.556
dusC
tRNA-dihydrouridine synthase C; Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines. Specifically modifies U16 in tRNAs. Belongs to the Dus family. DusC subfamily.
       0.542
PSHAa1674
Putative membrane protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; membrane component.
  
     0.515
atpI
Membrane-bound ATP synthase subunit, F1-F0-type proton-ATPase; Function of homologous gene experimentally demonstrated in an other organism; membrane component.
  
     0.474
PSHAa0344
Homologs of previously reported genes of unknown function.
  
     0.473
PSHAb0086
Putative membrane protein with Tetratricopeptide repeat domain; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; membrane component.
  
     0.463
PSHAa2382
Putative signal transduction protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy.
  
    0.457
PSHAa1192
Putative TPR domain protein (tetratricopeptide repeat); Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; 9482716, 1882418.
 
     0.432
Your Current Organism:
Pseudoalteromonas haloplanktis
NCBI taxonomy Id: 326442
Other names: P. haloplanktis TAC125, Pseudoalteromonas haloplanktis TAC125, Pseudoalteromonas haloplanktis str. TAC125, Pseudoalteromonas haloplanktis strain TAC125
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