Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
PSHAa1197Homologs of previously reported genes of unknown function. (285 aa)    
Predicted Functional Partners:
PSHAa1198
Homologs of previously reported genes of unknown function.
 
  
 0.994
PSHAa1196
Putative orphan protein; No homology to any previously reported sequences; membrane component.
 
  
 0.958
PSHAa1199
Homologs of previously reported genes of unknown function; membrane component.
       0.692
dusC
tRNA-dihydrouridine synthase C; Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines. Specifically modifies U16 in tRNAs. Belongs to the Dus family. DusC subfamily.
       0.669
PSHAb0104
Putative membrane DoxD-like family protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; membrane component.
  
  
 0.663
apt
Adenine phosphoribosyltransferase; Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis.
       0.646
PSHAa1201
Putative DnaX, DNA polymerase III, gamma/tau subunits; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; enzyme.
       0.633
PSHAa2985
Homologs of previously reported genes of unknown function.
   
    0.550
PSHAb0091
Putative protein with Cell divisionFtsK/SpoIIIE domain; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy.
   
    0.549
PSHAa0571
Putative alginate lyase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; enzyme.
   
    0.503
Your Current Organism:
Pseudoalteromonas haloplanktis
NCBI taxonomy Id: 326442
Other names: P. haloplanktis TAC125, Pseudoalteromonas haloplanktis TAC125, Pseudoalteromonas haloplanktis str. TAC125, Pseudoalteromonas haloplanktis strain TAC125
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