Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
PSHAa1240Homologs of previously reported genes of unknown function; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family. (391 aa)    
Predicted Functional Partners:
PSHAa1239
Putative transport protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; membrane component; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
 
 
 0.981
PSHAa2957
Putative multidrug resistance protein, AcrB/AcrD/AcrF family; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; transporter; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
 
 
 0.864
PSHAa0560
Putative multidrug resistance protein(AcrB/AcrD/AcrF family); Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
 
 
 0.857
tolC
Outer membrane protein tolC precursor; Function of homologous gene experimentally demonstrated in an other organism; transporter.
 
 0.782
PSHAa0558
Putative outer membrane transport protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; membrane component.
 
 
 0.733
PSHAb0439
Putative multidrug resistance protein (substrate binding lipoprotein); Function of strongly homologous gene; transporter; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
  
  
  0.711
PSHAb0487
Function of strongly homologous gene; transporter; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
  
  
  0.683
PSHAa2832
Putative multidrug efflux system (AcrA/AcrE family); Function of homologous gene experimentally demonstrated in an other organism; transporter; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
  
  
  0.641
PSHAa0559
Putative Secretion protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; transporter; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
  
  
 
0.628
PSHAa2958
Putative multidrug resistance protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
  
  
 
0.616
Your Current Organism:
Pseudoalteromonas haloplanktis
NCBI taxonomy Id: 326442
Other names: P. haloplanktis TAC125, Pseudoalteromonas haloplanktis TAC125, Pseudoalteromonas haloplanktis str. TAC125, Pseudoalteromonas haloplanktis strain TAC125
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