STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PSHAa1247Homologs of previously reported genes of unknown function. (423 aa)    
Predicted Functional Partners:
PSHAa1246
Homologs of previously reported genes of unknown function.
  
    0.909
PSHAa1245
Homologs of previously reported genes of unknown function.
       0.890
PSHAa1244
Homologs of previously reported genes of unknown function.
       0.606
PSHAa1248
Putative transport protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; transporter.
       0.532
PSHAa1249
Conserved protein of unknown function; Function of homologous gene experimentally demonstrated in an other organism; membrane component.
       0.532
Your Current Organism:
Pseudoalteromonas haloplanktis
NCBI taxonomy Id: 326442
Other names: P. haloplanktis TAC125, Pseudoalteromonas haloplanktis TAC125, Pseudoalteromonas haloplanktis str. TAC125, Pseudoalteromonas haloplanktis strain TAC125
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.