Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
PSHAa1248Putative transport protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; transporter. (380 aa)    
Predicted Functional Partners:
PSHAa1249
Conserved protein of unknown function; Function of homologous gene experimentally demonstrated in an other organism; membrane component.
       0.773
PSHAa1245
Homologs of previously reported genes of unknown function.
     
 0.543
PSHAa1246
Homologs of previously reported genes of unknown function.
       0.535
PSHAa1247
Homologs of previously reported genes of unknown function.
       0.535
mshO
Putative Mannose-sensitive agglutinin (MSHA) biogenesis protein MshO (pilus type IV); Function of strongly homologous gene; 11985966.
  
     0.499
lysC-2
Lysine-sensitive aspartokinase III; Function of homologous gene experimentally demonstrated in an other organism; enzyme; Belongs to the aspartokinase family.
       0.492
mshQ
Putative Mannose-sensitive agglutinin (MSHA) biogenesis protein MshQ (pilus type IV); Function of strongly homologous gene; 11985966.
  
    0.471
PSHAa1210
Putative response regulator; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; regulator.
 
     0.437
PSHAa1244
Homologs of previously reported genes of unknown function.
       0.415
PSHAa0761
Homologs of previously reported genes of unknown function.
  
     0.404
Your Current Organism:
Pseudoalteromonas haloplanktis
NCBI taxonomy Id: 326442
Other names: P. haloplanktis TAC125, Pseudoalteromonas haloplanktis TAC125, Pseudoalteromonas haloplanktis str. TAC125, Pseudoalteromonas haloplanktis strain TAC125
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